`
Center for Structural Genomics of Infectious Diseases

MgRNA: Classification of Mg2+ binding sites in RNA crystal structures

Mg2+ site A1618 in 4PE9 (2.95Å) -- RIBOSOME : Crystal structure of the e. coli ribosome bound to quinupristin. this file contains the 30s subunit of the first 70s ribosome.

Viewer options: (Jmol | JSmol) | Close this window to return to the list of Mg2+ binding sites being investigated
JSmol: HTML5 canvas version of the Jmol molecule viewer http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm
Binding environment of Mg2+ A1618
poly-nuclear Mg2+ site
Inner
sphere
Oph C:A1054(OP2), A:A1197(OP2)
Or
Ob+Nb
Water A1783, A1784, A1785, A1786
Other
Outer
sphere
Pout G:A1198
Rout G:A1053
Bout G:A1198, U:A1199, A:A1197
Each outer-sphere moiety is listed only once and only if it does not form inner-sphere interaction
Mouse click action:
Left-Click to rotate
Shift-Left-Click up & down to zoom
Right-Click for Jmol's context menu
Access console here
Additional controls:
Inner-sphere Residue Name:
Outer-sphere Moiety Name:
Metal Distances:
Outer-sphere Distances:
B factor(Occupancy):
Nucleic Acid Cartoon:
Spin:
Antialiasing:
On Off
On Off
On Off
On Off
On Off
On Off
On Off
On Off



Developed by Heping Zheng and Ivan Shabalin at Minor lab (http://olenka.med.virginia.edu/CrystUVa/)
For any help please contact <dust@iwonka.med.virginia.edu>