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Center for Structural Genomics of Infectious Diseases
MgRNA: Classification of Mg
2+
binding sites in RNA crystal structures
Mg
2+
site A3053 in
4TPF
(2.8Å) -- RIBOSOME :
Crystal structure of the e. coli ribosome bound to flopristin and linopristin. this file contains the 50s subunit of the second 70s ribosome with flopristin and linopristin bound.
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2+
binding sites being investigated
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http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm
Binding environment of Mg
2+
A3053
poly-nuclear Mg
2+
site
Inner
sphere
O
ph
C:A1670(OP1), U:A1671(OP2)
O
r
O
b
+N
b
Water
A3431, A3432, A3433, A3434
Other
Outer
sphere
P
out
A:A1672
R
out
B
out
Each outer-sphere moiety is listed only once and only if it does not form inner-sphere interaction
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Inner-sphere Residue Name:
Outer-sphere Moiety Name:
Metal Distances:
Outer-sphere Distances:
B factor(Occupancy):
Nucleic Acid Cartoon:
Spin:
Antialiasing:
On
Off
On
Off
On
Off
On
Off
On
Off
On
Off
On
Off
On
Off
Developed by Heping Zheng and Ivan Shabalin at Minor lab (
http://olenka.med.virginia.edu/CrystUVa/
)
For any help please contact <
dust@iwonka.med.virginia.edu
>