| Code | Name | Deposits | Targets | Ligand Type |
|---|---|---|---|---|
| 5WP | 1 | 1 | biological | |
| 178 | 1 | 1 | biological | |
| 5WQ | 1 | 1 | biological | |
| AKG | 2-oxyglutaric acid | 2 | 2 | biological |
| 649 | 5'-o-[(11-phenoxyundecanoyl)sulfamoyl]adenosine | 1 | 1 | biological |
| AM2 | 3 | 3 | biological | |
| AMP | 14 | 13 | biological | |
| CIT | 1 | 1 | biological | |
| 6L0 | 1 | 1 | biological | |
| ANP | phosphoaminophosphonic acid-adenylate ester | 4 | 3 | biological |
| APR | adenosine-5-diphosphoribose | 1 | 1 | biological |
| ATP | adenosine-5'-triphosphate | 3 | 2 | biological |
| 6PG | 6-phosphogluconic acid | 1 | 1 | biological |
| AXP | 4-acetamido-2,4-didexoy-d-glycero-beta-d-galacto-octopy ranosylphosphonic acid (an axial phosphonate) | 1 | 1 | biological |
| CP | carbamoyl phosphate | 2 | 1 | biological |
| CS | 2 | 1 | biological | |
| BDF | beta-d-fructopyranose | 2 | 2 | biological |
| 7CY | (1r,2s,3r,5r)-3-(6-amino-9h-purin-9-yl)-5-(hydroxymethy l)cyclopentane-1,2-diol | 1 | 1 | biological |
| BGC | 2 | 2 | biological | |
| F | unknown | 1 | 1 | biological |