| Code | Name | Deposits | Targets | Ligand Type |
|---|---|---|---|---|
| CL | chloride | 2 | 2 | modified residue |
| CL | chloride | 2 | 2 | biological |
| 3DS | (4s,5r)-4,5-dihydroxy-3-oxocyclohex-1-ene-1-carboxylic acid | 2 | 1 | biological |
| NAJ | nicotinamide-adenine-dinucleotide (acidic form) | 2 | 1 | biological |
| NAP | 2 | 2 | other | |
| MYR | 2 | 1 | biological | |
| MTX | 2 | 2 | biological | |
| CAC | 2 | 2 | crystallization | |
| MX2 | unknown | 2 | 1 | biological |
| 2D8 | 2 | 2 | crystallization | |
| MO6 | magnesium ion, 6 waters coordinated | 2 | 1 | crystallization |
| MOA | mycophenolic acid | 2 | 1 | biological |
| FE | 2 | 2 | biological | |
| MLT | 2 | 2 | other | |
| MOH | methanol | 2 | 1 | crystallization |
| MGP | 7-methyl-guanosine-5'-triphosphate | 2 | 1 | biological |
| BO3 | 2 | 2 | crystallization | |
| MAL | maltose | 2 | 2 | biological |
| 225 | 2 | 1 | crystallization | |
| LY0 | 2 | 2 | crystallization |