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Structure of IDP00079

Crystal structure of D-ribose high-affinity transport system from Salmonella typhimurium LT2

Edit deposit information
CSGID target
IDP00079 
PDB Id
3E7N (NCBI MMDB
Authors
B.Nocek,N.Maltseva,M.Gu,A.Joachimiak,W.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Boguslaw Nocek 
Responsible lab
Argonne National Laboratory 
Deposition Date
Aug 18, 2008 
Release Date
Aug 26, 2008 

Annotation

Description
Homologue of the high affinity ribose transport system (RbsD) as well as L-fucose transporter (FucU). RbsD have been shown to bind sugar, however lacks an enzyme activity toward sugars. It was indicated that RbsD does not appear to be essential enzyme.  
Functional assignment
 

Ligands

Ligand code Name Ligand type
EDO
MSE modified residue

Structure information

Unit cell parameters

Space Group
C 1 2 1  
Unit Cell

a=293.04Å, b=92.73Å, c=93.60Å
α=90.00, β=106.53, γ=90.00 
Solvent content
52.59  
Matthews coefficient
2.59  

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
30.00-2.45Å (2.51-2.45Å)  
Rall(%)
19.3 
Rwork(%)
19.1 (27.5) 
Rfree(%)
23.3 (33.3) 
Num. observed reflections
87798 (6281) 
Num. Rfree reflections
4389 (302) 
Completeness(%)
99.2 (97.1) 

Model parameters

Num Atoms
15567  
Num Waters
280  
Num Hetatoms
814  
Model mean isotropic B factor
14.280Å2  
RMSD bond length
0.014Å  
RMSD bond angle
1.398°  
Filename uploaded
3E7N.pdb (uploaded on Oct 27, 2008 1:05 PM)  
Inserted
Oct 27, 2008