Coverage of Infectious Pathogens*

Stages of targets according to unified status codes

Classification Genus Species # of structures in PDB at CSGID start # of structures in PDB # of CSGID structures CSGID as % of all entries CSGID as % of new entries
* "Number of Structures in PDB at CSGID start" denotes number of protein structures for a given species deposited in the PDB before October 1, 2007. "Current number of structures in PDB" denotes the number of structures deposited in the PDB as of April 23, 2017. For both PDB and CSGID only the structures released as of April 23, 2017 are taken into account (thus structures that have been deposited but are not yet released by the PDB are omitted). Assignment of species for PDB structures is based on taxonomy id and scientific name provided by depositors; the assignment may be imprecise in cases where only scientific name and no taxonomy id was given.
Actinobacteria (class) Bifidobacterium Bifidobacterium longum 8 40 2 5.0 6.2
Bacilli Bacillus Bacillus anthracis 82 420 157 37.4 46.4
Bacilli Enterococcus Enterococcus faecalis 105 225 7 3.1 5.8
Bacilli Enterococcus Enterococcus faecium 23 38 8 21.1 53.3
Bacilli Enterococcus Enterococcus gallinarum 0 6 4 66.7 66.7
Bacilli Listeria Listeria monocytogenes 52 250 58 23.2 29.3
Bacilli Staphylococcus Staphylococcus aureus 484 1287 67 5.2 8.3
Bacilli Staphylococcus Staphylococcus epidermidis 11 63 1 1.6 1.9
Bacilli Staphylococcus Staphylococcus haemolyticus 1 9 2 22.2 25.0
Bacilli Streptococcus Streptococcus agalactiae 17 67 2 3.0 4.0
Bacilli Streptococcus Streptococcus pneumoniae 156 450 21 4.7 7.1
Bacteroidia Bacteroides Bacteroides thetaiotaomicron 39 257 1 0.4 0.5
Betaproteobacteria Neisseria Neisseria meningitidis 66 205 4 2.0 2.9
Chlamydiae Chlamydia Chlamydia trachomatis 6 47 3 6.4 7.3
Clostridia Clostridium Clostridium difficile 6 125 24 19.2 20.2
Clostridia Clostridium Clostridium perfringens 37 180 14 7.8 9.8
Coccidia Cryptosporidium Cryptosporidium parvum 22 64 10 15.6 23.8
Coccodia Toxoplasma Toxoplasma gondii 44 150 20 13.3 18.9
Epsilonproteobacteria Campylobacter Campylobacter jejuni 30 207 65 31.4 36.7
Epsilonproteobacteria Helicobacter Helicobacter pylori 119 346 5 1.4 2.2
Gammaproteobacteria Acinetobacter Acinetobacter baumannii 4 98 12 12.2 12.8
Gammaproteobacteria Acinetobacter Acinetobacter haemolyticus 0 2 2 100.0 100.0
Gammaproteobacteria Coxiella Coxiella burnetii 0 62 10 16.1 16.1
Gammaproteobacteria Escherichia Escherichia coli 4117 6728 23 0.3 0.9
Gammaproteobacteria Francisella Francisella tularensis 6 111 63 56.8 60.0
Gammaproteobacteria Legionella Legionella pneumophila 14 124 4 3.2 3.6
Gammaproteobacteria Pseudomonas Pseudomonas aeruginosa 419 1094 6 0.5 0.9
Gammaproteobacteria Pseudomonas Pseudomonas fluorescens 73 159 1 0.6 1.2
Gammaproteobacteria Salmonella Salmonella enterica 387 848 74 8.7 16.1
Gammaproteobacteria Shigella Shigella flexneri 38 132 5 3.8 5.3
Gammaproteobacteria Vibrio Vibrio cholerae 103 467 109 23.3 29.9
Gammaproteobacteria Vibrio Vibrio parahaemolyticus 20 80 3 3.8 5.0
Gammaproteobacteria Vibrio Vibrio vulnificus 7 48 19 39.6 46.3
Gammaproteobacteria Yersinia Yersinia enterocolitica 32 67 6 9.0 17.1
Gammaproteobacteria Yersinia Yersinia pestis 25 180 85 47.2 54.8
Mammalia Homo Homo sapiens 11141 24663 1 0.0 0.0
Spirochaetia Leptospira Leptospira interrogans 12 29 1 3.4 5.9
Viruses Ebolavirus Zaire ebolavirus 3 20 4 20.0 23.5
Viruses Flavivirus Dengue virus 30 100 6 6.0 8.6
Viruses Flavivirus Japanese encephalitis virus 2 7 1 14.3 20.0
Viruses Flavivirus West Nile virus 15 26 2 7.7 18.2
Viruses Influenzavirus A Influenza A virus 126 666 3 0.5 0.6
Viruses Japanese encephalitis virus group St. Louis encephalitis virus 0 1 1 100.0 100.0
Viruses Orthopoxvirus Cowpox virus 4 7 3 42.9 100.0
Viruses Orthopoxvirus Ectromelia virus 3 9 1 11.1 16.7
Viruses Orthopoxvirus Monkeypox virus 0 1 1 100.0 100.0
Viruses Vibrio phage Vibrio phage ICP1 0 1 1 100.0 100.0