`
Center for Structural Genomics of Infectious Diseases

MgRNA: Classification of Mg2+ binding sites in RNA crystal structures

Mg2+ site A3305 in 3V2D (2.7Å) -- RIBOSOME : Crystal structure of yfia bound to the 70s ribosome. this pdb entry contains coordinates for the 50s subunit of the 1st ribosome in the asu

Viewer options: (Jmol | JSmol) | Close this window to return to the list of Mg2+ binding sites being investigated
JSmol: HTML5 canvas version of the Jmol molecule viewer http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm
Binding environment of Mg2+ A3305
Mg2+ bound by non-RNA
Inner
sphere
Oph C:A2612(OP1)
Or
Ob+Nb
Water A4537, A4538, A4539, A4540
Other HIS:E132(NE2)
Outer
sphere
Pout U:A2611, G:A745
Rout
Bout A:A746
Each outer-sphere moiety is listed only once and only if it does not form inner-sphere interaction
Mouse click action:
Left-Click to rotate
Shift-Left-Click up & down to zoom
Right-Click for Jmol's context menu
Access console here
Additional controls:
Inner-sphere Residue Name:
Outer-sphere Moiety Name:
Metal Distances:
Outer-sphere Distances:
B factor(Occupancy):
Nucleic Acid Cartoon:
Spin:
Antialiasing:
On Off
On Off
On Off
On Off
On Off
On Off
On Off
On Off



Developed by Heping Zheng and Ivan Shabalin at Minor lab (http://olenka.med.virginia.edu/CrystUVa/)
For any help please contact <dust@iwonka.med.virginia.edu>