`
Center for Structural Genomics of Infectious Diseases
MgRNA: Classification of Mg
2+
binding sites in RNA crystal structures
Mg
2+
site A3305 in
3V2D
(2.7Å) -- RIBOSOME :
Crystal structure of yfia bound to the 70s ribosome. this pdb entry contains coordinates for the 50s subunit of the 1st ribosome in the asu
Viewer options: (
Jmol
|
JSmol
) | Close this window to return to the list of Mg
2+
binding sites being investigated
Jmol
: an open-source Java viewer for chemical structures in 3D
http://www.jmol.org/
Binding environment of Mg
2+
A3305
Mg
2+
bound by non-RNA
Inner
sphere
O
ph
C:A2612(OP1)
O
r
O
b
+N
b
Water
A4537, A4538, A4539, A4540
Other
HIS:E132(NE2)
Outer
sphere
P
out
U:A2611, G:A745
R
out
B
out
A:A746
Each outer-sphere moiety is listed only once and only if it does not form inner-sphere interaction
Mouse click action:
Left-Click to rotate
Shift-Left-Click up & down to zoom
Right-Click for Jmol's context menu
Additional controls:
Inner-sphere Residue Name:
Outer-sphere Moiety Name:
Metal Distances:
Outer-sphere Distances:
B factor(Occupancy):
Nucleic Acid Cartoon:
Spin:
Antialiasing:
On
Off
On
Off
On
Off
On
Off
On
Off
On
Off
On
Off
On
Off
Developed by Heping Zheng and Ivan Shabalin at Minor lab (
http://olenka.med.virginia.edu/CrystUVa/
)
For any help please contact <
dust@iwonka.med.virginia.edu
>