Structure of IDP01304

Chaperone HscB from Vibrio cholerae.

Edit deposit information
CSGID target
IDP01304 
PDB Id
4IT5 (NCBI MMDB
Authors
J.Osipiuk,M.Gu,L.Papazisi,W.F.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Jerzy Osipiuk 
Responsible lab
Argonne National Laboratory 
Deposition Date
Jan 17, 2013 
Release Date
May 26, 2009 

Annotation

Description
HscB protein (heat shock cognate protein B), also known as Hsc20 (20K heat shock cognate protein), is a co-chaperone regulating the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain. The two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins. HscA has been shown to specifically bind to a conserved sequence present in the [FeS]-scaffold protein IscU. The interaction of IscU with HscA is regulated by HscB which binds the scaffold protein to assist delivery to the chaperone and stabilize the chaperone-scaffold complex by enhancing chaperone ATPase activity. The HscA/HscB system accelerates transfer of iron-sulfur clusters from the FeS-scaffold protein IscU to acceptor proteins in an ATP-dependent manner. This stimulation occurs at low chaperone/scaffold ratios, suggesting that the chaperones act catalytically. 
Functional assignment
 

Ligands

Ligand code Name Ligand type
MSE modified residue
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on

Structure information

Unit cell parameters

Space Group
P 1 21 1  
Unit Cell

a=55.43Å, b=100.71Å, c=70.35Å
α=90.00, β=90.47, γ=90.00 
Solvent content
49.27  
Matthews coefficient
2.42  

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
48.56-2.15Å (0.00-0.00Å)  
Rall(%)
22.2 
Rwork(%)
22.0 (0.0) 
Rfree(%)
25.9 (0.0) 
Num. observed reflections
85587 (0) 
Num. Rfree reflections
4339 (0) 
Completeness(%)
98.6 (0.0) 

Model parameters

Num Atoms
5378  
Num Waters
91  
Num Hetatoms
91  
Model mean isotropic B factor
61.130Å2  
RMSD bond length
0.000Å  
RMSD bond angle
0.000°  
Filename uploaded
9S__refine_58.pdb (uploaded on Jan 17, 2013 5:13 PM)  
Inserted
May 15, 2009