Coverage of Infectious Pathogens*

Stages of targets according to unified status codes

Classification Genus Species # of structures in PDB at CSGID start # of structures in PDB # of CSGID structures CSGID as % of all entries CSGID as % of new entries
* "Number of Structures in PDB at CSGID start" denotes number of protein structures for a given species deposited in the PDB before October 1, 2007. "Current number of structures in PDB" denotes the number of structures deposited in the PDB as of October 17, 2017. For both PDB and CSGID only the structures released as of October 17, 2017 are taken into account (thus structures that have been deposited but are not yet released by the PDB are omitted). Assignment of species for PDB structures is based on taxonomy id and scientific name provided by depositors; the assignment may be imprecise in cases where only scientific name and no taxonomy id was given.
Actinobacteria (class) Bifidobacterium Bifidobacterium longum 8 40 2 5.0 6.2
Bacilli Bacillus Bacillus anthracis 81 378 135 35.7 45.5
Bacilli Enterococcus Enterococcus faecalis 104 221 6 2.7 5.1
Bacilli Enterococcus Enterococcus faecium 22 37 8 21.6 53.3
Bacilli Enterococcus Enterococcus gallinarum 0 6 4 66.7 66.7
Bacilli Listeria Listeria monocytogenes 52 217 51 23.5 30.9
Bacilli Staphylococcus Staphylococcus aureus 468 1257 65 5.2 8.2
Bacilli Staphylococcus Staphylococcus epidermidis 10 62 1 1.6 1.9
Bacilli Staphylococcus Staphylococcus haemolyticus 1 9 2 22.2 25.0
Bacilli Streptococcus Streptococcus agalactiae 17 67 2 3.0 4.0
Bacilli Streptococcus Streptococcus pneumoniae 156 442 21 4.8 7.3
Bacteroidia Bacteroides Bacteroides thetaiotaomicron 39 256 1 0.4 0.5
Betaproteobacteria Neisseria Neisseria meningitidis 66 203 3 1.5 2.2
Chlamydiae Chlamydia Chlamydia trachomatis 6 44 3 6.8 7.9
Clostridia Clostridium Clostridium difficile 6 119 24 20.2 21.2
Clostridia Clostridium Clostridium perfringens 34 161 9 5.6 7.1
Coccidia Cryptosporidium Cryptosporidium parvum 22 60 7 11.7 18.4
Coccodia Toxoplasma Toxoplasma gondii 43 141 19 13.5 19.4
Epsilonproteobacteria Campylobacter Campylobacter jejuni 30 181 56 30.9 37.1
Epsilonproteobacteria Helicobacter Helicobacter pylori 115 337 4 1.2 1.8
Gammaproteobacteria Acinetobacter Acinetobacter baumannii 4 93 12 12.9 13.5
Gammaproteobacteria Acinetobacter Acinetobacter haemolyticus 0 2 2 100.0 100.0
Gammaproteobacteria Coxiella Coxiella burnetii 0 62 10 16.1 16.1
Gammaproteobacteria Escherichia Escherichia coli 3967 6397 21 0.3 0.9
Gammaproteobacteria Francisella Francisella tularensis 6 107 61 57.0 60.4
Gammaproteobacteria Legionella Legionella pneumophila 13 116 4 3.4 3.9
Gammaproteobacteria Pseudomonas Pseudomonas aeruginosa 405 1060 7 0.7 1.1
Gammaproteobacteria Pseudomonas Pseudomonas fluorescens 71 151 1 0.7 1.2
Gammaproteobacteria Salmonella Salmonella enterica 383 817 74 9.1 17.1
Gammaproteobacteria Shigella Shigella flexneri 36 121 4 3.3 4.7
Gammaproteobacteria Vibrio Vibrio cholerae 102 417 91 21.8 28.9
Gammaproteobacteria Vibrio Vibrio parahaemolyticus 20 78 2 2.6 3.4
Gammaproteobacteria Vibrio Vibrio vulnificus 7 45 16 35.6 42.1
Gammaproteobacteria Yersinia Yersinia enterocolitica 32 64 3 4.7 9.4
Gammaproteobacteria Yersinia Yersinia pestis 25 170 81 47.6 55.9
Mammalia Homo Homo sapiens 10766 23696 1 0.0 0.0
Spirochaetia Leptospira Leptospira interrogans 12 29 1 3.4 5.9
Viruses Ebolavirus Zaire ebolavirus 3 19 4 21.1 25.0
Viruses Flavivirus Dengue virus 30 87 6 6.9 10.5
Viruses Flavivirus Japanese encephalitis virus 2 7 1 14.3 20.0
Viruses Flavivirus West Nile virus 14 25 2 8.0 18.2
Viruses Influenzavirus A Influenza A virus 124 591 3 0.5 0.6
Viruses Japanese encephalitis virus group St. Louis encephalitis virus 0 1 1 100.0 100.0
Viruses Orthopoxvirus Cowpox virus 4 6 2 33.3 100.0
Viruses Orthopoxvirus Ectromelia virus 3 9 1 11.1 16.7
Viruses Orthopoxvirus Monkeypox virus 0 1 1 100.0 100.0