Structure of IDP00418

Proline aminopeptidase P II from Yersinia pestis

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CSGID target
IDP00418 
PDB Id
4PV4 (NCBI MMDB) 
Authors
J.Osipiuk,N.Maltseva,S.Shatsman,W.F.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Jerzy Osipiuk 
Responsible lab
Argonne National Laboratory 
Deposition Date
Mar 14, 2014 
Release Date
Apr 02, 2014 

Annotation

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Description
 
Functional assignment
exopeptidase 

Ligands

Ligand code Name Ligand type
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on biological
1PE crystallization
P6G hexaethylene glycol crystallization
PGE crystallization
EDO ethylene diol crystallization

Structure information

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Unit cell parameters

Space Group
P 21 21 2  
Unit Cell

a=124.30Å, b=82.86Å, c=110.09Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
29.40-1.76Å (1.81-1.76Å)  
Rall(%)
16.1 
Rwork(%)
16.0 (25.7) 
Rfree(%)
19.8 (29.2) 
Num. observed reflections
110163 (6741) 
Num. Rfree reflections
5508 (307) 
Completeness(%)
98.1 (82.3) 

Model parameters

Num Atoms
7193  
Num Waters
1172  
Num Hetatoms
1233  
Model mean isotropic B factor
25.880Å2  
RMSD bond length
0.016Å  
RMSD bond angle
1.686°  
Filename uploaded
x35f_refmac1.pdb (uploaded on Mar 14, 2014 4:37 PM)  
Inserted
Mar 14, 2014