Structure of IDP00493

Crystal structure of translocation protein TolB from Yersinia pestis

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CSGID target
IDP00493 
PDB Id
4PWZ (NCBI MMDB) 
Authors
N.Maltseva,Y.Kim,J.Osipiuk,W.F.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Natalia Maltseva 
Responsible lab
Argonne National Laboratory 
Deposition Date
Mar 21, 2014 
Release Date
Apr 02, 2014 

Annotation

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Ligands

Ligand code Name Ligand type
GOL glycerol crystallization
PGE crystallization
MES MES crystallization
SO4 sulfate biological
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on

Structure information

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Unit cell parameters

Space Group
P 1 21 1  
Unit Cell

a=52.44Å, b=95.81Å, c=80.51Å
α=90.00, β=95.39, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
30.74-1.73Å (1.75-1.73Å)  
Rall(%)
16.9 
Rwork(%)
16.7 (21.2) 
Rfree(%)
19.8 (25.0) 
Num. observed reflections
83625 (107) 
Num. Rfree reflections
4189 (1923) 
Completeness(%)
96.8 (86.5) 

Model parameters

Num Atoms
6568  
Num Waters
553  
Num Hetatoms
558  
Model mean isotropic B factor
21.950Å2  
RMSD bond length
0.010Å  
RMSD bond angle
1.290°  
RMSD dihedral angle
14°
 
Filename uploaded
dep.pdb (uploaded on Mar 28, 2014 5:42 PM)  
Inserted
Mar 28, 2014