Structure of IDP04529

Crystal Structure of Aminoglycoside/Multidrug Efflux System AcrD from Salmonella typhimurium

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CSGID target
IDP04529 
PDB Id
4R86 (NCBI MMDB) 
Authors
Y.Kim,N.Maltseva,S.Shatsman,W.F.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Aug 29, 2014 
Release Date
Oct 08, 2014 

Annotation

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Ligands

Ligand code Name Ligand type
BR bromide ion crystallization
PEG crystallization
EDO ethylene diol crystallization
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on

Structure information

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Unit cell parameters

Space Group
P 3 2 1  
Unit Cell

a=91.17Å, b=91.17Å, c=147.40Å
α=90.00, β=90.00, γ=120.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
45.58-3.00Å (3.23-3.00Å)  
Rall(%)
18.8 
Rwork(%)
18.6 (21.5) 
Rfree(%)
22.4 (24.3) 
Num. observed reflections
15177 (2754) 
Num. Rfree reflections
767 (143) 
Completeness(%)
98.1 (91.0) 

Model parameters

Num Atoms
4263  
Num Waters
6  
Num Hetatoms
154  
Model mean isotropic B factor
57.470Å2  
RMSD bond length
0.003Å  
RMSD bond angle
0.784°  
RMSD dihedral angle
14.977°
 
Filename uploaded
depA.pdb (uploaded on Aug 29, 2014 3:26 PM)  
Inserted
Aug 29, 2014