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Structure of IDP01530

Crystal structure of a putative succinate-semialdehyde dehydrogenase from Salmonella typhimurium LT2 with bound NAD

Edit deposit information
CSGID target
IDP01530 
PDB Id
3EFV (NCBI MMDB
Authors
J.S.Brunzelle,E.Evdokimova,M.Kudritska,W.F.Anderson,A.Savchenko,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Joseph Brunzelle 
Responsible lab
Northwestern University 
Deposition Date
Sep 10, 2008 
Release Date
Nov 04, 2008 

Annotation

Description
This enzyme belongs to the family of oxidoreductases, specifically those acting on the aldehyde or oxo group of donor with NAD+ or NADP+ as acceptor. The systematic name of this enzyme class is succinate-semialdehyde:NAD+ oxidoreductase.  
Functional assignment
 

Ligands

Ligand code Name Ligand type
MSE selenomethionine modified residue
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on biological

Structure information

Unit cell parameters

Space Group
P 32 2 1  
Unit Cell

a=133.83Å, b=133.83Å, c=245.28Å
α=90.00, β=90.00, γ=120.00 
Solvent content
61.42  
Matthews coefficient
3.19  

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
50.00-1.90Å (1.95-1.90Å)  
Rall(%)
16.0 
Rwork(%)
15.9 (17.3) 
Rfree(%)
18.5 (21.4) 
Num. observed reflections
199584 (14544) 
Num. Rfree reflections
9979 (725) 
Completeness(%)
99.9 (99.5) 

Model parameters

Num Atoms
13422  
Num Waters
2320  
Num Hetatoms
2904  
Model mean isotropic B factor
21.830Å2  
RMSD bond length
0.013Å  
RMSD bond angle
1.352°  
Filename uploaded
rcsb049271.pdb (uploaded on Oct 28, 2008 1:08 PM)  
Inserted
Oct 28, 2008