Structure of IDP52015

Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with Uridine-5''-Monophosphate

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CSGID target
IDP52015 
PDB Id
6WLC (NCBI MMDB) 
Authors
Kim, Y., Maltseva, N., Jedrzejczak, R., Endres, M., Chang, C., Godzik, A., Michalska, K., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Youngchang Kim 
Responsible lab
Argonne National Laboratory 
Deposition Date
Apr 19, 2020 
Release Date
Apr 29, 2020 

Annotation

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Ligands

Ligand code Name Ligand type
U5P uridine-5'-monophosphate biological
TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL crystallization
EDO ethylene diol crystallization
ACY crystallization
SO4 sulfate crystallization
FMT formate crystallization

Structure information

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Unit cell parameters

Space Group
P 63  
Unit Cell

a=150.96Å, b=150.96Å, c=112.30Å
α=90.00, β=90.00, γ=120.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
40.63-1.82Å (1.84-1.82Å)  
Rall(%)
17.1 
Rwork(%)
17.0 (35.2) 
Rfree(%)
19.5 (36.8) 
Num. observed reflections
136168 (4049) 
Num. Rfree reflections
6726 (171) 
Completeness(%)
99.6 (94.0) 

Model parameters

Num Atoms
5707  
Num Waters
486  
Num Hetatoms
611  
Model mean isotropic B factor
48.770Å2  
RMSD bond length
0.006Å  
RMSD bond angle
0.762°  
RMSD dihedral angle
19.1°
 
Filename uploaded
NSP15-U5P.pdb (uploaded on Jul 29, 2020 11:35 AM)  
Inserted
Jul 29, 2020