Publications

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    2021
  1. Chen RE, Winkler ES, Case JB, Aziati ID, Bricker TL, Joshi A, Darling TL, Ying B, Errico JM, Shrihari S, VanBlargan LA, Xie X, Gilchuk P, Zost SJ, Droit L, Liu Z, Stumpf S, Wang D, Handley SA, Stine WB, Shi PY, Davis-Gardner ME, Suthar MS, Knight MG, Andino R, Chiu CY, Ellebedy AH, Fremont DH, Whelan SPJ, Crowe JE, Purcell L, Corti D, Boon ACM, Diamond MS (2021)
    In vivo monoclonal antibody efficacy against SARS-CoV-2 variant strains.
    Nature,596:103-108 (Details) (Abstract)
    Times cited: 0
  2. Bricker TL, Darling TL, Hassan AO, Harastani HH, Soung A, Jiang X, Dai YN, Zhao H, Adams LJ, Holtzman MJ, Bailey AL, Case JB, Fremont DH, Klein R, Diamond MS, Boon ACM (2021)
    A single intranasal or intramuscular immunization with chimpanzee adenovirus-vectored SARS-CoV-2 vaccine protects against pneumonia in hamsters.
    Cell reports,36:109400 (Details) (Abstract)
    Times cited: 3
  3. Wilamowski M, Hammel M, Leite W, Zhang Q, Kim Y, Weiss K, Jedrzejczak R, Rosenberg DJ, Fan Y, Wower J, Bierma J, Sarker AH, Tsutakawa SE, Pingali SV, O''Neill HM, Joachimiak A, Hura GL (2021)
    Transient complexes of the Nsp7, Nsp8 and Nsp12 in SARS-CoV-2 replication transcription complex.
    Biophysical Journal,120:3152-3165 (Details) (Abstract)
    Times cited: 0
  4. Devkota K, Schapira M, Perveen S, Khalili Yazdi A, Li F, Chau I, Ghiabi P, Hajian T, Loppnau P, Bolotokova A, Satchell KJF, Wang K, Li D, Liu J, Smil D, Luo M, Jin J, Fish PV, Brown PJ, Vedadi M (2021)
    Probing the SAM Binding Site of SARS-CoV-2 Nsp14 In Vitro Using SAM Competitive Inhibitors Guides Developing Selective Bisubstrate Inhibitors.
    SLAS discovery : advancing life sciences R & D,26:24725552211026261 (Details) (Abstract)
    Times cited: 0
  5. Minasov G, Rosas-Lemus M, Shuvalova L, Inniss NL, Brunzelle JS, Daczkowski CM, Hoover P, Mesecar AD, Satchell KJF (2021)
    Mn 2+ coordinates Cap-0-RNA to align substrates for efficient 2''- O-methyl transfer by SARS-CoV-2 nsp16
    Science Signaling,14: (Details) (Abstract)
    Times cited: 0
  6. VanBlargan LA, Errico JM, Kafai NM, Burgomaster KE, Jethva PN, Broeckel RM, Meade-White K, Nelson CA, Himansu S, Wang D, Handley SA, Gross ML, Best SM, Pierson TC, Fremont DH, Diamond MS (2021)
    Broadly neutralizing monoclonal antibodies protect against multiple tick-borne flaviviruses.
    Journal of Experimental Medicine,218: (Details) (Abstract)
    Times cited: 2
  7. Smith BK, Janowski AB, Danis JE, Harvey IB, Zhao H, Dai YN, Farnsworth CW, Gronowski AM, Roper S, Fremont DH, Wang D (2021)
    Seroprevalence of SARS-CoV-2 Antibodies in Children and Adults in St. Louis, Missouri, USA.
    mSphere,6: (Details) (Abstract)
    Times cited: 1
  8. Klancher CA, Minasov G, Podicheti R, Rusch DB, Dalia TN, Satchell KJF, Neiditch MB, Dalia AB (2021)
    The ChiS-Family DNA-Binding Domain Contains a Cryptic Helix-Turn-Helix Variant.
    mBio,12: (Details) (Abstract)
    Times cited: 0
  9. Hattori SI, Higashi-Kuwata N, Hayashi H, Allu SR, Raghavaiah J, Bulut H, Das D, Anson BJ, Lendy EK, Takamatsu Y, Takamune N, Kishimoto N, Murayama K, Hasegawa K, Li M, Davis DA, Kodama EN, Yarchoan R, Wlodawer A, Misumi S, Mesecar AD, Ghosh AK, Mitsuya H (2021)
    A small molecule compound with an indole moiety inhibits the main protease of SARS-CoV-2 and blocks virus replication.
    Nature communications,12:668 (Details) (Abstract)
    Times cited: 8
  10. Earnest JT, Holmes AC, Basore K, Mack M, Fremont DH, Diamond MS (2021)
    The mechanistic basis of protection by non-neutralizing anti-alphavirus antibodies.
    Cell reports,35:108962 (Details) (Abstract)
    Times cited: 0
  11. Dugan HL, Stamper CT, Li L, Changrob S, Asby NW, Halfmann PJ, Zheng NY, Huang M, Shaw DG, Cobb MS, Erickson SA, Guthmiller JJ, Stovicek O, Wang J, Winkler ES, Madariaga ML, Shanmugarajah K, Jansen MO, Amanat F, Stewart I, Utset HA, Huang J, Nelson CA, Dai YN, Hall PD, Jedrzejczak RP, Joachimiak A, Krammer F, Diamond MS, Fremont DH, Kawaoka Y, Wilson PC (2021)
    Profiling B cell immunodominance after SARS-CoV-2 infection reveals antibody evolution to non-neutralizing viral targets.
    Immunity,54:1290-1303.e7 (Details) (Abstract)
    Times cited: 2
  12. Chen RE, Zhang X, Case JB, Winkler ES, Liu Y, VanBlargan LA, Liu J, Errico JM, Xie X, Suryadevara N, Gilchuk P, Zost SJ, Tahan S, Droit L, Turner JS, Kim W, Schmitz AJ, Thapa M, Wang D, Boon ACM, Presti RM, O''Halloran JA, Kim AHJ, Deepak P, Pinto D, Fremont DH, Crowe JE, Corti D, Virgin HW, Ellebedy AH, Shi PY, Diamond MS (2021)
    Resistance of SARS-CoV-2 variants to neutralization by monoclonal and serum-derived polyclonal antibodies.
    Nature medicine,27:717-726 (Details) (Abstract)
    Times cited: 88
  13. Bordeleau E, Stogios PJ, Evdokimova E, Koteva K, Savchenko A, Wright GD (2021)
    ApmA Is a Unique Aminoglycoside Antibiotic Acetyltransferase That Inactivates Apramycin.
    mBio,12: (Details) (Abstract)
    Times cited: 2
  14. Baumgartner JT, Habeeb Mohammad TS, Czub MP, Majorek KA, Arolli X, Variot C, Anonick M, Minor W, Ballicora MA, Becker DP, Kuhn ML (2021)
    Gcn5-Related N- Acetyltransferases (GNATs) With a Catalytic Serine Residue Can Play Ping-Pong Too
    Front Mol Biosc.,8:646046 (Details) (Abstract)
    Times cited: 1
  15. Semper C, Watanabe N, Savchenko A (2021)
    Structural characterization of nonstructural protein 1 from SARS-CoV-2.
    iScience,24:101903 (Details) (Abstract)
    Times cited: 7
  16. Sevvana M, Keck Z, Foung SK, Kuhn RJ (2021)
    Structural perspectives on HCV humoral immune evasion mechanisms.
    Current opinion in virology,49:92-101 (Details) (Abstract)
    Times cited: 0
  17. Hall MD, Anderson JM, Anderson A, Baker D, Bradner J, Brimacombe KR, Campbell EA, Corbett KS, Carter K, Cherry S, Chiang L, Cihlar T, de Wit E, Denison M, Disney M, Fletcher CV, Ford-Scheimer SL, Götte M, Grossman AC, Hayden FG, Hazuda DJ, Lanteri CA, Marston H, Mesecar AD, Moore S, Nwankwo JO, O''Rear J, Painter G, Saikatendu KS, Schiffer CA, Sheahan TP, Shi PY, Smyth HD, Sofia MJ, Weetall M, Weller SK, Whitley R, Fauci AS, Austin CP, Collins FS, Conley AJ, Davis MI (2021)
    Report of the National Institutes of Health SARS-CoV-2 Antiviral Therapeutics Summit.
    The Journal of infectious diseases,224:S1-S21 (Details) (Abstract)
    Times cited: 0
  18. Guthmiller JJ, Stovicek O, Wang J, Changrob S, Li L, Halfmann P, Zheng NY, Utset H, Stamper CT, Dugan HL, Miller WD, Huang M, Dai YN, Nelson CA, Hall PD, Jansen M, Shanmugarajah K, Donington JS, Krammer F, Fremont DH, Joachimiak A, Kawaoka Y, Tesic V, Madariaga ML, Wilson PC (2021)
    SARS-CoV-2 Infection Severity Is Linked to Superior Humoral Immunity against the Spike.
    mBio,12: (Details) (Abstract)
    Times cited: 12
  19. Kim Y, Wower J, Maltseva N, Chang C, Jedrzejczak R, Wilamowski M, Kang S, Nicolaescu V, Randall G, Michalska K, Joachimiak A (2021)
    Tipiracil binds to uridine site and inhibits Nsp15 endoribonuclease NendoU from SARS-CoV-2.
    Communications biology,4:193 (Details) (Abstract)
    Times cited: 7
  20. Tan K, Teschler JK, Wu R, Jedrzejczak RP, Zhou M, Shuvalova LA, Endres MJ, Welk LF, Kwon K, Anderson WF, Satchell KJF, Yildiz FH, Joachimiak A (2021)
    Sensor Domain of Histidine Kinase VxrA of
    Journal of Bacteriology,: (Details) (Abstract)
    Times cited: 0
  21. Hodge CD, Rosenberg DJ, Grob P, Wilamowski M, Joachimiak A, Hura GL, Hammel M (2021)
    Rigid monoclonal antibodies improve detection of SARS-CoV-2 nucleocapsid protein.
    mAbs,13:1905978 (Details) (Abstract)
    Times cited: 0
  22. Michalska K, Jedrzejczak R, Wower J, Chang C, Baragaña B, Gilbert IH, Forte B, Joachimiak A (2021)
    Mycobacterium tuberculosis Phe-tRNA synthetase: structural insights into tRNA recognition and aminoacylation.
    Nucleic Acids Research,49:5351-5368 (Details) (Abstract)
    Times cited: 0
  23. Michalska K, Joachimiak A (2021)
    Structural Genomics and the Protein Data Bank.
    Journal of Biological Chemistry,296:100747 (Details) (Abstract)
    Times cited: 1
  24. Wilamowski M, Sherrell DA, Minasov G, Kim Y, Shuvalova L, Lavens A, Chard R, Maltseva N, Jedrzejczak R, Rosas-Lemus M, Saint N, Foster IT, Michalska K, Satchell KJF, Joachimiak A (2021)
    2''-O methylation of RNA cap in SARS-CoV-2 captured by serial crystallography.
    Proceedings of the National Academy of Sciences of the United States of America,118: (Details) (Abstract)
    Times cited: 3
  25. Michalska K, Wellington S, Maltseva N, Jedrzejczak R, Selem-Mojica N, Rosas-Becerra LR, Barona-Gómez F, Hung DT, Joachimiak A (2021)
    Catalytically impaired TrpA subunit of tryptophan synthase from Chlamydia trachomatis is an allosteric regulator of TrpB.
    Protein Science,30:1904-1918 (Details) (Abstract)
    Times cited: 0
  26. Target: IDP52003:
    Osipiuk J, Azizi SA, Dvorkin S, Endres M, Jedrzejczak R, Jones KA, Kang S, Kathayat RS, Kim Y, Lisnyak VG, Maki SL, Nicolaescu V, Taylor CA, Tesar C, Zhang YA, Zhou Z, Randall G, Michalska K, Snyder SA, Dickinson BC, Joachimiak A (2021)
    Structure of papain-like protease from SARS-CoV-2 and its complexes with non-covalent inhibitors.
    Nature communications,12:743 (Details) (Abstract)
    Times cited: 23
  27. Grabowski M, Cooper DR, Brzezinski D, Macnar JM, Shabalin IG, Cymborowski M, Otwinowski Z, Minor W (2021)
    Synchrotron Radiation as a Tool for Macromolecular X-Ray Crystallography: a XXI Century Perspective.
    Nuclear instruments & methods in physics research. Section B, Beam interactions with materials and atoms,489:30-40 (Details) (Abstract)
    Times cited: 0
  28. 2020
  29. Joachimiak, A (2020)
    Introduction.
    Protein Science,29:623-628 (Details) (Abstract)
    Times cited: 0
  30. Clasman JR, Everett RK, Srinivasan K, Mesecar AD (2020)
    Decoupling deISGylating and deubiquitinating activities of the MERS virus papain-like protease.
    Antiviral research,174:104661 (Details) (Abstract)
    Times cited: 12
  31. Wessel AW, Kose N, Bombardi RG, Roy V, Chantima W, Mongkolsapaya J, Edeling MA, Nelson CA, Bosch I, Alter G, Screaton GR, Fremont DH, Crowe JE, Diamond MS (2020)
    Antibodies targeting epitopes on the cell-surface form of NS1 protect against Zika virus infection during pregnancy.
    Nature communications,11:5278 (Details) (Abstract)
    Times cited: 8
  32. Vogt MR, Fu J, Kose N, Williamson LE, Bombardi R, Setliff I, Georgiev IS, Klose T, Rossmann MG, Bochkov YA, Gern JE, Kuhn RJ, Crowe JE (2020)
    Human antibodies neutralize enterovirus D68 and protect against infection and paralytic disease.
    Science immunology,5: (Details) (Abstract)
    Times cited: 8
  33. Turabelidze G, Faulconer BC, Lawrence SJ, Pierce A, Smith BK, Fremont DH (2020)
    Healthcare-associated outbreak of severe acute respiratory coronavirus virus 2 (SARS-CoV-2) in a rural hospital in Missouri, March 2020.
    Infection control and hospital epidemiology,:1-2 (Details) (Abstract)
    Times cited: 0
  34. Sedova M, Jaroszewski L, Alisoltani A, Godzik A (2020)
    Coronavirus3D: 3D structural visualization of COVID-19 genomic divergence.
    Bioinformatics,36:4360-4362 (Details) (Abstract)
    Times cited: 8
  35. Riva L, Yuan S, Yin X, Martin-Sancho L, Matsunaga N, Pache L, Burgstaller-Muehlbacher S, De Jesus PD, Teriete P, Hull MV, Chang MW, Chan JF, Cao J, Poon VK, Herbert KM, Cheng K, Nguyen TH, Rubanov A, Pu Y, Nguyen C, Choi A, Rathnasinghe R, Schotsaert M, Miorin L, Dejosez M, Zwaka TP, Sit KY, Martinez-Sobrido L, Liu WC, White KM, Chapman ME, Lendy EK, Glynne RJ, Albrecht R, Ruppin E, Mesecar AD, Johnson JR, Benner C, Sun R, Schultz PG, Su AI, García-Sastre A, Chatterjee AK, Yuen KY, Chanda SK (2020)
    Discovery of SARS-CoV-2 antiviral drugs through large-scale compound repurposing.
    Nature,586:113-119 (Details) (Abstract)
    Times cited: 181
  36. Madsen A, Dai YN, McMahon M, Schmitz AJ, Turner JS, Tan J, Lei T, Alsoussi WB, Strohmeier S, Amor M, Mohammed BM, Mudd PA, Simon V, Cox RJ, Fremont DH, Krammer F, Ellebedy AH (2020)
    Human Antibodies Targeting Influenza B Virus Neuraminidase Active Site Are Broadly Protective.
    Immunity,53:852-863.e7 (Details) (Abstract)
    Times cited: 8
  37. Ma H, Kim AS, Kafai NM, Earnest JT, Shah AP, Case JB, Basore K, Gilliland TC, Sun C, Nelson CA, Thackray LB, Klimstra WB, Fremont DH, Diamond MS (2020)
    LDLRAD3 is a receptor for Venezuelan equine encephalitis virus.
    Nature,588:308-314 (Details) (Abstract)
    Times cited: 9
  38. Tan K, Zhou M, Jedrzejczak RP, Wu R, Higuera RA, Borek D, Babnigg G, Joachimiak A (2020)
    Structures of teixobactin-producing nonribosomal peptide synthetase condensation and adenylation domains.
    Current research in structural biology,2:14-24 (Details) (Abstract)
    Times cited: 2
  39. Hassan AO, Kafai NM, Dmitriev IP, Fox JM, Smith BK, Harvey IB, Chen RE, Winkler ES, Wessel AW, Case JB, Kashentseva E, McCune BT, Bailey AL, Zhao H, VanBlargan LA, Dai YN, Ma M, Adams LJ, Shrihari S, Danis JE, Gralinski LE, Hou YJ, Schäfer A, Kim AS, Keeler SP, Weiskopf D, Baric RS, Holtzman MJ, Fremont DH, Curiel DT, Diamond MS (2020)
    A Single-Dose Intranasal ChAd Vaccine Protects Upper and Lower Respiratory Tracts against SARS-CoV-2.
    Cell,183:169-184.e13 (Details) (Abstract)
    Times cited: 81
  40. Czub MP, Handing KB, Venkataramany BS, Cooper DR, Shabalin IG, Minor W (2020)
    Albumin-Based Transport of Nonsteroidal Anti-Inflammatory Drugs in Mammalian Blood Plasma.
    Journal of Medicinal Chemistry,63:6847-6862 (Details) (Abstract)
    Times cited: 10
  41. Case JB, Rothlauf PW, Chen RE, Liu Z, Zhao H, Kim AS, Bloyet LM, Zeng Q, Tahan S, Droit L, Ilagan MXG, Tartell MA, Amarasinghe G, Henderson JP, Miersch S, Ustav M, Sidhu S, Virgin HW, Wang D, Ding S, Corti D, Theel ES, Fremont DH, Diamond MS, Whelan SPJ (2020)
    Neutralizing Antibody and Soluble ACE2 Inhibition of a Replication-Competent VSV-SARS-CoV-2 and a Clinical Isolate of SARS-CoV-2.
    Cell host & microbe,28:475-485.e5 (Details) (Abstract)
    Times cited: 71
  42. Case JB, Rothlauf PW, Chen RE, Kafai NM, Fox JM, Smith BK, Shrihari S, McCune BT, Harvey IB, Keeler SP, Bloyet LM, Zhao H, Ma M, Adams LJ, Winkler ES, Holtzman MJ, Fremont DH, Whelan SPJ, Diamond MS (2020)
    Replication-Competent Vesicular Stomatitis Virus Vaccine Vector Protects against SARS-CoV-2-Mediated Pathogenesis in Mice.
    Cell host & microbe,28:465-474.e4 (Details) (Abstract)
    Times cited: 40
  43. Bromberg R, Guo Y, Borek D, Otwinowski Z (2020)
    High-resolution cryo-EM reconstructions in the presence of substantial aberrations.
    IUCrJ,7:445-452 (Details) (Abstract)
    Times cited: 4
  44. Alsoussi WB, Turner JS, Case JB, Zhao H, Schmitz AJ, Zhou JQ, Chen RE, Lei T, Rizk AA, McIntire KM, Winkler ES, Fox JM, Kafai NM, Thackray LB, Hassan AO, Amanat F, Krammer F, Watson CT, Kleinstein SH, Fremont DH, Diamond MS, Ellebedy AH (2020)
    A Potently Neutralizing Antibody Protects Mice against SARS-CoV-2 Infection.
    Journal of Immunology,205:915-922 (Details) (Abstract)
    Times cited: 56
  45. Branton SA, Ghorbani A, Bolt BN, Fifield H, Berghuis LM, Larijani M (2020)
    Activation-induced cytidine deaminase can target multiple topologies of double-stranded DNA in a transcription-independent manner.
    FASEB Journal,34:9245-9268 (Details) (Abstract)
    Times cited: 3
  46. Kneller DW, Phillips G, O''Neill HM, Jedrzejczak R, Stols L, Langan P, Joachimiak A, Coates L, Kovalevsky A (2020)
    Structural plasticity of SARS-CoV-2 3CL M
    Nature communications,11:3202 (Details) (Abstract)
    Times cited: 67
  47. Guthmiller JJ, Stovicek O, Wang J, Changrob S, Li L, Halfmann P, Zheng NY, Utset H, Stamper CT, Dugan HL, Miller WD, Huang M, Dai YN, Nelson CA, Hall PD, Jansen M, Shanmugarajah K, Donington JS, Krammer F, Fremont DH, Joachimiak A, Kawaoka Y, Tesic V, Madariaga ML, Wilson PC (2020)
    SARS-CoV-2 infection severity is linked to superior humoral immunity against the spike.
    bioRxiv : the preprint server for biology,: (Details) (Abstract)
    Times cited: 6
  48. Michalska K, Kim Y, Jedrzejczak R, Maltseva NI, Stols L, Endres M, Joachimiak A (2020)
    Crystal structures of SARS-CoV-2 ADP-ribose phosphatase: from the apo form to ligand complexes.
    IUCrJ,7:814-824 (Details) (Abstract)
    Times cited: 29
  49. Wilson P, Stamper C, Dugan H, Li L, Asby N, Halfmann P, Guthmiller J, Zheng NY, Huang M, Stovicek O, Wang J, Madariaga ML, Shanmugarajah K, Jansen M, Amanat F, Stewart I, Changrob S, Utset H, Huang J, Nelson C, Dai YN, Hall P, Jedrzejczak R, Joachimiak A, Krammer F, Fremont D, Kawaoka Y (2020)
    Distinct B cell subsets give rise to antigen-specific antibody responses against SARS-CoV-2.
    Research square,: (Details) (Abstract)
  50. Kneller DW, Phillips G, O''Neill HM, Tan K, Joachimiak A, Coates L, Kovalevsky A (2020)
    Room-temperature X-ray crystallography reveals the oxidation and reactivity of cysteine residues in SARS-CoV-2 3CL M
    IUCrJ,7: (Details) (Abstract)
    Times cited: 8
  51. Czub MP, Boulton AM, Rastelli EJ, Tasker NR, Maskrey TS, Blanco IK, McQueeney KE, Bushweller JH, Minor W, Wipf P, Sharlow ER, Lazo JS (2020)
    Structure of the Complex of an Iminopyridinedione Protein Tyrosine Phosphatase 4A3 Phosphatase Inhibitor with Human Serum Albumin.
    Molecular pharmacology,98:648-657 (Details) (Abstract)
    Times cited: 2
  52. Cooper DR, Grabowski M, Zimmerman MD, Porebski PJ, Shabalin IG, Woinska M, Domagalski MJ, Zheng H, Sroka P, Cymborowski M, Czub MP, Niedzialkowska E, Venkataramany BS, Osinski T, Fratczak Z, Bajor J, Gonera J, MacLean E, Wojciechowska K, Konina K, Wajerowicz W, Chruszcz M, Minor W (2020)
    State-of-the-Art Data Management: Improving the Reproducibility, Consistency, and Traceability of Structural Biology and in Vitro Biochemical Experiments.
    Methods in Molecular Biology,2199:209-236 (Details) (Abstract)
    Times cited: 3
  53. Target: CPX_52010_52016:
    Rosas-Lemus M, Minasov G, Shuvalova L, Inniss NL, Kiryukhina O, Brunzelle J, Satchell KJF (2020)
    High-resolution structures of the SARS-CoV-2 2''-
    Science signaling,13: (Details) (Abstract)
    Times cited: 24
  54. Ghosh AK, Brindisi M, Shahabi D, Chapman ME, Mesecar AD (2020)
    Drug Development and Medicinal Chemistry Efforts toward SARS-Coronavirus and Covid-19 Therapeutics.
    ChemMedChem,15:907-932 (Details) (Abstract)
    Times cited: 82
  55. Hersch SJ, Watanabe N, Stietz MS, Manera K, Kamal F, Burkinshaw B, Lam L, Pun A, Li M, Savchenko A, Dong TG (2020)
    Envelope stress responses defend against type six secretion system attacks independently of immunity proteins.
    Nature microbiology,5:706-714 (Details) (Abstract)
    Times cited: 24
  56. Zhao H, Xu L, Bombardi R, Nargi R, Deng Z, Errico JM, Nelson CA, Dowd KA, Pierson TC, Crowe JE, Diamond MS, Fremont DH (2020)
    Mechanism of differential Zika and dengue virus neutralization by a public antibody lineage targeting the DIII lateral ridge.
    Journal of Experimental Medicine,217: (Details) (Abstract)
    Times cited: 13
  57. Kim AS, Zimmerman O, Fox JM, Nelson CA, Basore K, Zhang R, Durnell L, Desai C, Bullock C, Deem SL, Oppenheimer J, Shapiro B, Wang T, Cherry S, Coyne CB, Handley SA, Landis MJ, Fremont DH, Diamond MS (2020)
    An Evolutionary Insertion in the Mxra8 Receptor-Binding Site Confers Resistance to Alphavirus Infection and Pathogenesis.
    Cell host & microbe,27:428-440.e9 (Details) (Abstract)
    Times cited: 8
  58. Allen JP, Ozer EA, Minasov G, Shuvalova L, Kiryukhina O, Satchell KJF, Hauser AR (2020)
    A comparative genomics approach identifies contact-dependent growth inhibition as a virulence determinant.
    Proceedings of the National Academy of Sciences of the United States of America,117:6811-6821 (Details) (Abstract)
    Times cited: 10
  59. Batlle D, Wysocki J, Satchell K (2020)
    Soluble angiotensin-converting enzyme 2: a potential approach for coronavirus infection therapy?
    Clinical science (London, England : 1979),134:543-545 (Details) (Abstract)
    Times cited: 232
  60. Minasov G, Lam MR, Rosas-Lemus M, Sławek J, Woinska M, Shabalin IG, Shuvalova L, Palsson BØ, Godzik A, Minor W, Satchell KJF (2020)
    Comparison of metal-bound and unbound structures of aminopeptidase B proteins from Escherichia coli and Yersinia pestis.
    Protein Science,29:1618-1628 (Details) (Abstract)
    Times cited: 0
  61. Target: IDP51000:
    Kim Y, Jedrzejczak R, Maltseva NI, Wilamowski M, Endres M, Godzik A, Michalska K, Joachimiak A (2020)
    Crystal structure of Nsp15 endoribonuclease NendoU from SARS-CoV-2.
    Protein Science,29:1596-1605 (Details) (Abstract)
    Times cited: 115
  62. Target: CPX_06552_06553:
    Michalska K, Chang C, Maltseva NI, Jedrzejczak R, Robertson GT, Gusovsky F, McCarren P, Schreiber SL, Nag PP, Joachimiak A (2020)
    Allosteric inhibitors of Mycobacterium tuberculosis tryptophan synthase.
    Protein Science,29:779-788 (Details) (Abstract)
    Times cited: 8
  63. Target: IDP63252:
    Michalska K, Kowiel M, Bigelow L, Endres M, Gilski M, Jaskolski M, Joachimiak A (2020)
    3D domain swapping in the TIM barrel of the α subunit of Streptococcus pneumoniae tryptophan synthase.
    Acta crystallographica. Section D, Structural biology,76:166-175 (Details) (Abstract)
    Times cited: 2
  64. Kwon K, Biancucci M, Woida PJ, Satchell KJF (2020)
    Direct Cloning Method for Expression of Recombinant Proteins with an Inositol Hexakisphosphate Inducible Self-Cleaving Tag.
    Methods in Molecular Biology,2091:163-179 (Details) (Abstract)
    Times cited: 0
  65. Target: IDP97431:
    Caplan T, Lorente-Macías Á, Stogios PJ, Evdokimova E, Hyde S, Wellington MA, Liston S, Iyer KR, Puumala E, Shekhar-Guturja T, Robbins N, Savchenko A, Krysan DJ, Whitesell L, Zuercher WJ, Cowen LE (2020)
    Overcoming Fungal Echinocandin Resistance through Inhibition of the Non-essential Stress Kinase Yck2.
    Cell chemical biology,27:269-282.e5 (Details) (Abstract)
    Times cited: 10
  66. Target: IDP91041, IDP91774, IDP91778, IDP91871, IDP91046:
    Stogios PJ, Savchenko A (2020)
    Molecular mechanisms of vancomycin resistance.
    Protein Science,29:654-669 (Details) (Abstract)
    Times cited: 8
  67. 2019
  68. Salazar V, Jagger BW, Mongkolsapaya J, Burgomaster KE, Dejnirattisai W, Winkler ES, Fernandez E, Nelson CA, Fremont DH, Pierson TC, Crowe JE, Screaton GR, Diamond MS (2019)
    Dengue and Zika Virus Cross-Reactive Human Monoclonal Antibodies Protect against Spondweni Virus Infection and Pathogenesis in Mice.
    Cell reports,26:1585-1597.e4 (Details) (Abstract)
    Times cited: 5
  69. Wang X, Piersma SJ, Elliott JI, Errico JM, Gainey MD, Yang L, Nelson CA, Yokoyama WM, Fremont DH (2019)
    Cowpox virus encodes a protein that binds B7.1 and B7.2 and subverts T cell costimulation.
    Proceedings of the National Academy of Sciences of the United States of America,116:21113-21119 (Details) (Abstract)
    Times cited: 2
  70. Target: IDP01350, IDP07511, IDP07301:
    Alcala A, Ramirez G, Solis A, Kim Y, Tan K, Luna O, Nguyen K, Vazquez D, Ward M, Zhou M, Mulligan R, Maltseva N, Kuhn ML (2019)
    Structural and functional characterization of three Type B and C chloramphenicol acetyltransferases from Vibrio species.
    Protein Science,29:695-710 (Details) (Abstract)
    Times cited: 2
  71. Target: IDP96102:
    Rosas-Lemus M, Minasov G, Shuvalova L, Wawrzak Z, Kiryukhina O, Mih N, Jaroszewski L, Palsson B, Godzik A, Satchell KJF (2019)
    Structure of galactarate dehydratase, a new fold in an enolase involved in bacterial fitness after antibiotic treatment.
    Protein Science,29:711-722 (Details) (Abstract)
    Times cited: 0
  72. Target: IDP95888:
    Chang C, Wu C, Osipiuk J, Siegel SD, Zhu S, Liu X, Joachimiak A, Clubb RT, Das A, Ton-That H (2019)
    Cell-to-cell interaction requires optimal positioning of a pilus tip adhesin modulated by gram-positive transpeptidase enzymes.
    Proceedings of the National Academy of Sciences of the United States of America,116:18041-18049 (Details) (Abstract)
    Times cited: 8
  73. Target: IDP97218:
    Kim Y, Maltseva N, Wilamowski M, Tesar C, Endres M, Joachimiak A (2019)
    Structural and biochemical analysis of the metallo-β-lactamase L1 from emerging pathogen Stenotrophomonas maltophilia revealed the subtle but distinct di-metal scaffold for catalytic activity.
    Protein Science,29:723-743 (Details) (Abstract)
    Times cited: 5
  74. Ritzert JT, Minasov G, Embry R, Schipma MJ, Satchell KJF (2019)
    The Cyclic AMP Receptor Protein Regulates Quorum Sensing and Global Gene Expression in Yersinia pestis during Planktonic Growth and Growth in Biofilms.
    mBio,10:e02613-19 (Details) (Abstract)
    Times cited: 8
  75. Target: IDP96613, IDP96614:
    Ahmad S, Wang B, Walker MD, Tran HR, Stogios PJ, Savchenko A, Grant RA, McArthur AG, Laub MT, Whitney JC (2019)
    An interbacterial toxin inhibits target cell growth by synthesizing (p)ppApp.
    Nature,575:674-678 (Details) (Abstract)
    Times cited: 34
  76. Target: IDP91783:
    Semper C, Stogios P, Meziane-Cherif D, Evdokimova E, Courvalin P, Savchenko A (2019)
    Structural characterization of aminoglycoside 4''-O-adenylyltransferase ANT(4'')-IIb from Pseudomonas aeruginosa.
    Protein Science,29:758-767 (Details) (Abstract)
    Times cited: 1
  77. Target: IDP92718:
    Popov G, Evdokimova E, Stogios PJ, Savchenko A (2019)
    Structure of the full length Serratia marcescens acetyltransferase AAC(3)-Ia in complex with coenzyme A.
    Protein Science,29:803-808 (Details) (Abstract)
    Times cited: 0
  78. Shabalin IG, Gritsunov A, Hou J, Lipowska J, Miks CD, Cooper DR, Minor W, Christendat D (2019)
    Structural and biochemical analysis of Bacillus anthracis prephenate dehydrogenase reveals an unusual mode of inhibition by tyrosine via the ACT domain.
    FEBS Journal,287:2235-2255 (Details) (Abstract)
    Times cited: 1
  79. Grabowski M, Cymborowski M, Porebski PJ, Osinski T, Shabalin IG, Cooper DR, Minor W (2019)
    The Integrated Resource for Reproducibility in Macromolecular Crystallography: Experiences of the first four years.
    Structural dynamics (Melville, N.Y.),6:064301 (Details) (Abstract)
    Times cited: 11
  80. Vakser IA, Joachimiak A (2019)
    Editorial overview: Macromolecular assemblies.
    Current Opinion in Structural Biology,55:iii-v (Details) (Abstract)
    Times cited: 0
  81. Filippova EV, Weigand S, Kiryukhina O, Wolfe AJ, Anderson WF (2019)
    Analysis of crystalline and solution states of ligand-free spermidine N-acetyltransferase (SpeG) from Escherichia coli.
    Acta crystallographica. Section D, Structural biology,75:545-553 (Details) (Abstract)
    Times cited: 2
  82. Target: CPX_63252_63253, CPX_63257_63258, IDP63268 :
    Michalska K, Gale J, Joachimiak G, Chang C, Hatzos-Skintges C, Nocek B, Johnston SE, Bigelow L, Bajrami B, Jedrzejczak RP, Wellington S, Hung DT, Nag PP, Fisher SL, Endres M, Joachimiak A (2019)
    Conservation of the structure and function of bacterial tryptophan synthases.
    IUCrJ,6:649-664 (Details) (Abstract)
    Times cited: 6
  83. Target: IDP95468:
    Basore K, Kim AS, Nelson CA, Zhang R, Smith BK, Uranga C, Vang L, Cheng M, Gross ML, Smith J, Diamond MS, Fremont DH (2019)
    Cryo-EM Structure of Chikungunya Virus in Complex with the Mxra8 Receptor.
    Cell,177:1725-1737.e16 (Details) (Abstract)
    Times cited: 25
  84. Target: IDP04461, IDP90537:
    Lipowska J, Miks CD, Kwon K, Shuvalova L, Zheng H, Lewiński K, Cooper DR, Shabalin IG, Minor W (2019)
    Pyrimidine biosynthesis in pathogens - Structures and analysis of dihydroorotases from Yersinia pestis and Vibrio cholerae.
    International journal of biological macromolecules,136:1176-1187 (Details) (Abstract)
    Times cited: 3
  85. Target: IDP07306:
    Lazar JT, Shuvalova L, Rosas-Lemus M, Kiryukhina O, Satchell KJF, Minasov G (2019)
    Structural comparison of p-hydroxybenzoate hydroxylase (PobA) from Pseudomonas putida with PobA from other Pseudomonas spp. and other monooxygenases.
    Acta crystallographica. Section F, Structural biology communications,75:507-514 (Details) (Abstract)
    Times cited: 0
  86. Michalska K, Zhang K, March ZM, Hatzos-Skintges C, Pintilie G, Bigelow L, Castellano LM, Miles LJ, Jackrel ME, Chuang E, Jedrzejczak R, Shorter J, Chiu W, Joachimiak A (2019)
    Structure of Calcarisporiella thermophila Hsp104 Disaggregase that Antagonizes Diverse Proteotoxic Misfolding Events.
    Structure,27:449-463.e7 (Details) (Abstract)
    Times cited: 15
  87. Target: IDP01178:
    Yu R, Kim Y, Maltseva N, Braunstein P, Joachimiak A, Hedstrom L (2019)
    Oxanosine Monophosphate Is a Covalent Inhibitor of Inosine 5''-Monophosphate Dehydrogenase.
    Chemical research in toxicology,32:456-466 (Details) (Abstract)
    Times cited: 0
  88. Czub MP, Venkataramany BS, Majorek KA, Handing KB, Porebski PJ, Beeram SR, Suh K, Woolfork AG, Hage DS, Shabalin IG, Minor W (2019)
    Testosterone meets albumin - the molecular mechanism of sex hormone transport by serum albumins.
    Chemical science,10:1607-1618 (Details) (Abstract)
    Times cited: 17
  89. Kowiel M, Brzezinski D, Porebski PJ, Shabalin IG, Jaskolski M, Minor W (2019)
    Automatic Recognition of Ligands in Electron Density by Machine Learning.
    Bioinformatics,35:452-461 (Details) (Abstract)
    Times cited: 11
  90. 2018
  91. Hu LI, Filippova EV, Dang J, Pshenychnyi S, Ruan J, Kiryukhina O, Anderson WF, Kuhn ML, Wolfe AJ (2018)
    The spermidine acetyltransferase SpeG regulates transcription of the small RNA rprA.
    PLoS ONE,13:e0207563 (Details) (Abstract)
    Times cited: 3
  92. Faralla C, Bastounis EE, Ortega FE, Light SH, Rizzuto G, Gao L, Marciano DK, Nocadello S, Anderson WF, Robbins JR, Theriot JA, Bakardjiev AI (2018)
    Listeria monocytogenes InlP interacts with afadin and facilitates basement membrane crossing.
    PLos Pathogens,14:e1007094 (Details) (Abstract)
    Times cited: 14
  93. Matelska D, Shabalin IG, Jabłońska J, Domagalski MJ, Kutner J, Ginalski K, Minor W (2018)
    Classification, substrate specificity and structural features of D-2-hydroxyacid dehydrogenases: 2HADH knowledgebase.
    BMC evolutionary biology,18:199 (Details) (Abstract)
    Times cited: 8
  94. Czub MP, Zhang B, Chiarelli MP, Majorek KA, Joe L, Porebski PJ, Revilla A, Wu W, Becker DP, Minor W, Kuhn ML (2018)
    A Gcn5-related N-acetyltransferase (GNAT) capable of acetylating polymyxin B and colistin antibiotics in vitro.
    Biochemistry,57:7011-7020 (Details) (Abstract)
    Times cited: 8
  95. Shabalin IG, Porebski PJ, Minor W (2018)
    Refining the macromolecular model - achieving the best agreement with the data from X-ray diffraction experiment.
    Crystallography reviews,24:236-262 (Details) (Abstract)
    Times cited: 19
  96. Raczynska JE, Shabalin IG, Minor W, Wlodawer A, Jaskolski M (2018)
    A close look onto structural models and primary ligands of metallo-β-lactamases.
    Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy,40:1-12 (Details) (Abstract)
    Times cited: 32
  97. Nelson CA, Wilen CB, Dai YN, Orchard RC, Kim AS, Stegeman RA, Hsieh LL, Smith TJ, Virgin HW, Fremont DH (2018)
    Structural basis for murine norovirus engagement of bile acids and the CD300lf receptor.
    Proceedings of the National Academy of Sciences of the United States of America,115:E9201-E9210 (Details) (Abstract)
    Times cited: 40
  98. Target: IDP91511:
    Biancucci M, Minasov G, Banerjee A, Herrera A, Woida PJ, Kieffer MB, Bindu L, Abreu-Blanco M, Anderson WF, Gaponenko V, Stephen AG, Holderfield M, Satchell KJF (2018)
    The bacterial Ras/Rap1 site-specific endopeptidase RRSP cleaves Ras through an atypical mechanism to disrupt Ras-ERK signaling.
    Science signaling,11:eaat8335 (Details) (Abstract)
    Times cited: 18
  99. Target: IDP91572:
    Valleau D, Little DJ, Borek D, Skarina T, Quaile AT, Di Leo R, Houliston S, Lemak A, Arrowsmith CH, Coombes BK, Savchenko A (2018)
    Functional diversification of the NleG effector family in enterohemorrhagic Escherichia coli
    Proceedings of the National Academy of Sciences of the United States of America,115:10004-10009 (Details) (Abstract)
    Times cited: 9
  100. Target: IDP92102, IDP92076, IDP92040, :
    Joseph D. Lykins, Ekaterina V. Filippova, Andrei S. Halavaty, George Minasov, Ying Zhou, Ievgeniia Dubrovska, Kristin J. Flores, Ludmilla A. Shuvalova, Jiapeng Ruan, Kamal El Bissati, Sarah Dovgin, Craig W. Roberts, Stuart Woods, Jon D. Moulton, Hong Moulton, Martin J. McPhillie, Stephen P. Muench, Colin W. G. Fishwick, Elisabetta Sabini, Dhanasekaran Shanmugam, David S. Roos, Rima McLeod, Wayne F. Anderson, and Huân M. Ngô (2018)
    CSGID Solves Structures and Identifies Phenotypes for Five Enzymes in Toxoplasma gondii
    Frontiers in cellular and infection microbiology,8:352 (Details) (Abstract)
    Times cited: 5
  101. Filippova EV, Zemaitaitis B, Aung T, Wolfe AJ, Anderson WF (2018)
    Structural Basis for DNA Recognition by the Two-Component Response Regulator RcsB.
    mBio,9:e01993-17 (Details) (Abstract)
    Times cited: 8
  102. Luong TT, Tirgar R, Reardon-Robinson ME, Joachimiak A, Osipiuk J, Ton-That H (2018)
    Structural Basis of a Thiol-Disulfide Oxidoreductase in the Hedgehog-Forming Actinobacterium Corynebacterium matruchotii.
    Journal of Bacteriology,200:e00783-17 (Details) (Abstract)
    Times cited: 5
  103. Chang C, Amer BR, Osipiuk J, McConnell SA, Huang IH, Hsieh V, Fu J, Nguyen HH, Muroski J, Flores E, Ogorzalek Loo RR, Loo JA, Putkey JA, Joachimiak A, Das A, Clubb RT, Ton-That H (2018)
    In vitro reconstitution of sortase-catalyzed pilus polymerization reveals structural elements involved in pilin cross-linking.
    Proceedings of the National Academy of Sciences of the United States of America,115:E5477-E5486 (Details) (Abstract)
    Times cited: 10
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