| Code | Name | Deposits | Targets | Ligand Type |
|---|---|---|---|---|
| SAM | s-adenosylmethionine | 5 | 2 | biological |
| MX0 | unknown | 5 | 1 | biological |
| EOH | ethanol | 5 | 4 | crystallization |
| CA | calcium ion | 5 | 4 | biological |
| POP | 5 | 5 | biological | |
| PG5 | 5 | 4 | crystallization | |
| U | unknown | 5 | 2 | biological |
| IMD | 5 | 5 | crystallization | |
| NDP | Nicotinamide adenine dinucleotide phosphate | 5 | 5 | biological |
| CME | 5 | 5 | modified residue | |
| GAL | beta-d-galactose | 4 | 3 | biological |
| ACO | 4 | 2 | other | |
| CD | Cadmium | 4 | 4 | crystallization |
| SIA | o-sialic acid | 4 | 3 | biological |
| A | unknown | 4 | 1 | biological |
| M7G | 7n-methyl-8-hydroguanosine-5'-diphosphate | 4 | 1 | biological |
| 0V5 | 4 | 3 | biological | |
| PLP | pyridoxal-5'-phosphate | 4 | 2 | biological |
| S3P | shikimate-3-phosphate | 4 | 3 | biological |
| JNK | n-{2'-[(4-fluorophenyl)amino]-4,4'-bipyridin-2-yl}-4-me thoxycyclohexanecarboxamide | 4 | 1 | biological |